SELECTED PUBLICATIONS
   
 


The manuscripts available on our site are provided for your personal use only and may not be re-transmitted or redistributed without written permissions from the paper's publisher. You may not upload any of this site's material to any public server, on-line service, or bulletin board without prior written permission from the publisher and authors. You may not make copies for any commercial purpose.  Reproduction of materials retrieved from this web site is subject to the U.S. Copyright Act of 1976, Title 17 U.S.C.


Hoogerheide, D.P., F. Albertorio, and J.A. Golovchenko. 2013. Escape of DNA from a weakly biased thin nanopore: Experimental evidence for a universal diffusive behavior. Physical Review Letters 111: 248301. Click here for the online abstract.

Garaj, S., S. Liu, J.A. Golovchenko, and D. Branton. 2013. Molecule-hugging graphene nanopores. Proc. Natl. Acad. Sci. USA 110: 12192-12196. Click here for online article.

Lu, B., D.P. Hoogerheide, Q. Zhao, H. Zhang, Z. Tang, D. Yu, and J.A. Golovchenko. 2013. Pressure-controlled motion of single polymers through solid-state nanopores. Nano Letters 13: 3048-3052. Click here for online access.

Lu, B., D.P. Hoogerheide, Q. Zhao, and D. Yu. 2012. Effective driving force applied on DNA inside a solid-state nanopore. Physical Review E 86: 011921. Copyright 2012 American Physical Society.

Vlassarev, D.M. and J.A. Golovchenko. 2012. Trapping DNA near a solid-state nanopore. Biophysical Journal 103: 352-356.

Kuan, A.T. and J.A. Golovchenko. 2012. Nanometer-thin solid-state nanopores by cold ion beam sculpting. Applied Physics Letters 100: 213104.
   Copyright 2012 American Institute of Physics. This article may be downloaded for personal use only. Any other use requires prior permission of the author and the American Institute of Physics.

Russo, C.J. and J.A. Golovchenko. 2012. Atom-by-atom nucleation and growth of graphene nanopores. Proc. Natl. Acad. Sci. U.S.A. 109: 5953-5957.

Gardener, J.A. and J.A. Golovchenko. 2012. Ice-assisted electron beam lithography of graphene. Nanotechnology 23: 185302.   

Cheang-Wong, J.-C., K. Narumi, G.M. Schürmann, M.J. Aziz, and J.A. Golovchenko. 2012. Tunable nanometer electrode gaps by MeV ion irradiation. Applied Physics Letters 100: 153108.   Copyright 2012 American Institute of Physics. This article may be downloaded for personal use only. Any other use requires prior permission of the author and the American Institute of Physics.

Han, A., A. Kuan, J.A. Golovchenko, and D. Branton. 2012. Nanopatterning on nonplanar and fragile substrates with ice resists. Nano Letters 12: 1018-1021.   

Sadki, E.S., S. Garaj, D. Vlassarev, J.A. Golovchenko, and D. Branton. 2011. Embedding a carbon nanotube across the diameter of a solid state nanopore. Journal of Vacuum Science and Technology B 29: 053001-1 - 053001-4.
Copyright 2011 American Institute of Physics.

Lu, B., F. Albertorio, D.P. Hoogerheide, and J.A. Golovchenko. 2011. Origins and consequences of velocity fluctuations during DNA passage through a nanopore. Biophysical Journal 101: 70-79.

Han, A., J. Chervinsky, D. Branton, and J.A. Golovchenko. 2011. An ice lithography instrument. Review of Scientific Instruments 82: 065110-1 - 065110-6.   

Hoogerheide, D.P., H. B. George, J.A. Golovchenko, and M.J. Aziz. 2011. Thermal activation and saturation of ion beam sculpting. Journal of Applied Physics 109: 074312-1 - 074312-4.   

Garaj, S., W. Hubbard, and J.A. Golovchenko. 2010. Graphene synthesis by ion implantation. Applied Physics Letters 97: 183103-1 - 183103-3).
   

Han, A., D. Vlassarev, J. Wang, J.A. Golovchenko, and D. Branton. 2010. Ice lithography for nanodevices. Nano Letters 10: 5056-5059.
   

Garaj, S., W. Hubbard, A. Reina, J. Kong, D. Branton, and J.A. Golovchenko. 2010. Graphene as a subnanometre trans-electrode membrane. Nature 467: 190-193. Cover story.


Click on the cover image, above, for a link to the journal article.

George, H.B, Y. Tang, X. Chen, J. Li, J.W. Hutchinson, J.A. Golovchenko, and M.J. Aziz. 2010. Nanopore fabrication in amorphous Si: Viscous flow model and comparison to experiment. J. Appl. Phys. 108: 014310-1 - 014310-8.

George, H.B., D. P. Hoogerheide, C.S. Madi, D.C. Bell, J.A. Golovchenko, and M.J. Aziz. 2010. Ion-sculpting of nanopores in amorphous metals, semiconductors, and insulators. Appl. Phys. Lett. 96: 263111-1 - 263111-3.


Albertorio, F., M.E. Hughes, J.A. Golovchenko, and D. Branton. 2009. Base dependent DNA-carbon nanotube interactions: activation enthalpies and assembly-disassembly control. Nanotechnology 20: 395101-1 - 395101-9.

Hoogerheide, D.P., S. Garaj, and J.A. Golovchenko. 2009. Probing surface charge fluctuations with solid-state nanopores. Phys. Rev. Lett. 102: 256804-1 - 256804-4.

Branton, D., D.W. Deamer, A. Marziali, H. Bayley, S.A. Benner, T. Butler, M. Di Ventra, S. Garaj, A. Hibbs, X. Huang, S.B. Jovanovich, P.S. Krstic, S. Lindsay, X.S. Ling, C.H. Mastrangelo, A. Meller, J.S. Oliver, Y.V. Pershin, J.M. Ramsey, R. Riehn, G.V. Soni, V. Tabard-Cossa, M. Wanunu, M. Wiggin, and J.A. Schloss. 2008. The potential and challenges of nanopore sequencing. Nature Biotechnology 26: 1146-1153.

Gershow, M. and J.A. Golovchenko. 2007. Recapturing and trapping single molecules with a solid-state nanopore. Nature Nanotechnology 2: 775-779. (including a related New & Views article by Derek Stein).

Hoogerheide, D.P. and J.A. Golovchenko. 2007. Dynamics of ion beam stimulated surface mass transport to nanopores. in Ion-Beam-Based Nanofabrication, edited by D. Ila, J. Baglin, N. Kishimoto, and P.K. Chu (Mater. Res. Soc. Symp. Proc. Volume 1020, Warrendale, PA), paper number 1020-GG02-01.

Fologea, D., E. Brandin, J. Uplinger, D. Branton, and J. Li. 2007. DNA conformation and base number simultaneously determined in a nanopore. Electrophoresis 28: 3186-3192.

Hughes, M.E., E. Brandin, and J.A. Golovchenko. 2007. Optical absorption of DNA-carbon nanotube structures. Nano Letters 7: 1191-1194.

Kim, Y.-R., P. Chen, M.J. Aziz, D. Branton, and J.J. Vlassak. 2006. Focused ion beam induced deflections of freestanding thin films. J. Appl. Phys. 100: 104322-1 - 104322-9.

Park, S.Y., C.J. Russo, D. Branton, and H.A. Stone. 2006. Eddies in a bottleneck: An arbitrary Debye length theory for capillary electroosmosis. J. Colloid Interface Sci. 297: 832-839.

Peng, H.B., M.E. Hughes, and J.A. Golovchenko. 2006. Room-temperature single-charge sensitivity in carbon nanotube field-effect transistors. Appl. Phys. Lett. 89: 243502-1 - 243502-3.

Cai, Q., B. Ledden, E. Krueger, J.A. Golovchenko, and J. Li. 2006. Nanopore sculpting with noble gas ions. J. Appl. Phys. 100: 024914-1 - 024914-6.

Mitsui, T., D. Stein, Y.-R. Kim, D. Hoogerheide, and J.A. Golovchenko. 2006. Nanoscale volcanoes: Accretion of matter at ion-sculpted nanopores. Phys. Rev. Lett. 96: 036102-1 - 036102-4.

King, G.M. and J.A. Golovchenko. 2005. Probing nanotube-nanopore interactions. Phys. Rev. Lett. 95: 216103-1 - 216103-4.

Fologea, D., M. Gershow, B. Ledden, D.S. McNabb, J.A. Golovchenko, and J. Li. 2005. Detecting single stranded DNA with a solid state nanopore. Nano Letters 5: 1905-1909.

King, G.M., G. Schürmann, D. Branton, and J.A. Golovchenko. 2005. Nanometer patterning with ice. Nano Letters 5: 1157-1160.

Ristroph, T., A. Goodsell, J.A. Golovchenko, and L.V. Hau. 2005. Detection and quantized conductance of neutral atoms near a charged carbon nanotube. Phys. Rev. Lett. 94: 066102-1 - 066102-4.

Chen, P., J. Gu, E. Brandin, Y.-R. Kim, Q. Wang, and D. Branton. 2004. Probing single DNA molecule transport using fabricated nanopores. Nano Letters 4: 2293-2298.

Wang, H., J.E. Dunning, A. P.-H. Huang, J.A. Nyamwanda, and D. Branton. 2004. DNA heterogeneity and phosphorylation unveiled by single-molecule electrophoresis. Proc. Natl. Acad. Sci. U.S.A. 101: 13472-13477.

Peng, H.B. and J.A. Golovchenko. 2004. Coulomb blockade in suspended Si3N4-coated single-walled carbon nanotubes. Appl. Phys. Lett. 84: 5428-5430.

Chen, P., T. Mitsui, D.B. Farmer, J. Golovchenko, R.G. Gordon, and D. Branton. 2004. Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores. Nano Letters 4: 1333-1337.

Stein, D.M., C.J. McMullan, J. Li, and J.A. Golovchenko. 2004. Feedback-controlled ion beam sculpting apparatus. Review of Scientific Instruments 75: 900-905.

Peng, H.B., T.G. Ristroph, G.M. Schürmann, G.M. King, J. Yoon, V. Narayanamurti, and J.A. Golovchenko. 2003. Patterned growth of single-walled carbon nanotube arrays from a vapor-deposited Fe catalyst. App. Phys. Lett. 83: 4238-4240.

Li, J., M. Gershow, D. Stein, E. Brandin, and J.A. Golovchenko. 2003. DNA molecules and configurations in a solid-state nanopore microscope. Nature Materials 2: 611-615.

Sauer-Budge, A.F., J.A. Nyamwanda, D.K. Lubensky, and D. Branton. 2003. Unzipping kinetics of double-stranded DNA in a nanopore. Phys. Rev. Lett. 90: 238101-1 - 238101-4.

Stein, D., J. Li, and J.A. Golovchenko. 2002. Ion-beam sculpting time scales. Phys. Rev. Lett. 89: 276106-1 - 276106-4.

Deamer, D.W. and D. Branton. 2002. Characterization of nucleic acids by nanopore analysis. Acc. Chem. Res. 35: 817-825.

Meller, A. and D. Branton. 2002. Single molecule measurements of DNA transport through a nanopore. Electrophoresis 23: 2583-2591.

Branton, D. and A. Meller. 2002. Using nanopores to discriminate between single molecules of DNA. in Structure and Dynamics of Confined Polymers (Kasianowicz, J.J., Kellermayer, M.S.Z., and Deamer, D.W., eds.), Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 177-185. See preprint.

Wang, H. and D. Branton. 2001. Nanopores with a spark for single-molecule detection. Nature Biotechnology 19: 622-623.

Li, J., D. Stein, C. McMullan, D. Branton, M.J. Aziz, and J.A. Golovchenko. 2001. Ion-beam sculpting at nanometre length scales. Nature 412: 166-169.

Meller, A., L. Nivon, and D. Branton. 2001. Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett. 86: 3435-3438.

Meller, A., L. Nivon, E. Brandin, J. Golovchenko, and D. Branton. 2000. Rapid nanopore discrimination between single polynucleotide molecules. Proc. Natl. Acad. Sci. USA 97: 1079-1084.

Akeson, M., D. Branton, J.J. Kasianowicz, E. Brandin, and D.W. Deamer. 1999. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys. J. 77: 3227-3233.

Branton, D. and J. Golovchenko. 1999. Adapting to nanoscale events. Nature 398: 660-661.

Kasianowicz, J.J., E. Brandin, D. Branton, and D.W. Deamer. 1996. Characterization of individual polynucleotide molecules using a membrane channel. Proceedings of the National Academy of Sciences U.S.A. 93: 13770-13773.